Selected Publications

CPAgents: Agentic Composite Phenotype Generation for Cardiac Disease Association

Accepted at MICCAI 2026

Multi-Agent Reasoning for Cardiovascular Imaging Phenotype Analysis

Accepted at MICCAI 2025

Mesh4D: A Motion-Aware Multi-View Variational Autoencoder for 3D+t Mesh Reconstruction

Accepted at MICCAI 2025

A personalized time-resolved 3D mesh generative model for unveiling normal heart dynamics

Nature Machine Intelligence (2025)

Genetic and phenotypic architecture of human myocardial trabeculation

Nature Cardiovascular Research (2024)

CHeart: A Conditional Spatio-Temporal Generative Model for Cardiac Anatomy

IEEE Transactions on Medical Imaging (2023)

Diagram explaining Baseline and BSD methods for evaluating jailbreak attacks on language models.

Towards Effective MLLM Jailbreaking Through Balanced On-Topicness and OOD-Intensity

arXiv preprint

CPAgents: Agentic Composite Phenotype Generation for Cardiac Disease Association

Zuoou Li, Wenlong Zhao, Kelly Yu, Weitong Zhang, Paul M. Matthews, Wenjia Bai, Bernhard Kainz, Mengyun Qiao. MICCAI 2026.

CRAgents for Disease Modelling via Multi-Agent Critique and Refinement

Kelly Yu, Zuoou Li, Paul M Matthews, Wenjia Bai, Bernhard Kainz, Mengyun Qiao. MIDL 2026.

Mesh4D: A Motion-Aware Multi-View Variational Autoencoder for 3D+t Mesh Reconstruction

Mengyun Qiao*, Jin Zheng*, Weitong Zhang, Qiang Ma, Liu Li, Bernhard Kainz, Declan P O’Regan, Paul M Matthews, Steven Niederer, Wenjia Bai. MICCAI 2025.

Multi-Agent Reasoning for Cardiovascular Imaging Phenotype Analysis

Weitong Zhang*, Mengyun Qiao*, Chengqi Zang, Steven Niederer, Paul M Matthews, Wenjia Bai, Bernhard Kainz. MICCAI 2025.

CardiacFlow: 3D+t Four-Chamber Cardiac Shape Completion and Generation via Flow Matching

Qiang Ma, Qingjie Meng, Mengyun Qiao, Paul M. Matthews, Declan P. O’Regan, and Wenjia Bai. MICCAI 2025

A personalized time-resolved 3D mesh generative model for unveiling normal heart dynamics

Mengyun Qiao, Kathryn A McGurk, Shuo Wang, Paul M Matthews, Declan P O’Regan, Wenjia Bai. Nature Machine Intelligence 7 (5), 800-811, 2025.

A Foundation Model for Lesion Segmentation on Brain MRI with Mixture of Modality Experts

Xinru Zhang, Ni Ou, Berke Doga Basaran, Marco Visentin, Mengyun Qiao, Renyang Gu, Paul M Matthews, Yaou Liu, Chuyang Ye, Wenjia Bai

IEEE Transactions on Medical Imaging 44(6), 2594-2604, 2025.

Genetic and phenotypic architecture of human myocardial trabeculation

Kathryn A McGurk, Mengyun Qiao, Sean L Zheng, Arunashis Sau, Albert Henry, Antonio Luiz P Ribeiro, Antônio H Ribeiro, Fu Siong Ng, R Thomas Lumbers, Wenjia Bai, James S Ware, Declan P O’Regan

Nature Cardiovascular Research 3, 1503–1515, 2024.

CHeart: A conditional spatio-temporal generative model for cardiac anatomy

Mengyun Qiao, Shuo Wang, Huaqi Qiu, Antonio De Marvao, Declan P O’Regan, Daniel Rueckert, Wenjia Bai

IEEE transactions on medical imaging 43(3), 1259-1269, 2023.

LUMA

LUMA

Selected Publications

CPAgents: Agentic Composite Phenotype Generation for Cardiac Disease Association

Multi-Agent Reasoning for Cardiovascular Imaging Phenotype Analysis

Mesh4D: A Motion-Aware Multi-View Variational Autoencoder for 3D+t Mesh Reconstruction

A personalized time-resolved 3D mesh generative model for unveiling normal heart dynamics

Genetic and phenotypic architecture of human myocardial trabeculation

CHeart: A Conditional Spatio-Temporal Generative Model for Cardiac Anatomy

Towards Effective MLLM Jailbreaking Through Balanced On-Topicness and OOD-Intensity

Publications

CPAgents: Agentic Composite Phenotype Generation for Cardiac Disease Association

CRAgents for Disease Modelling via Multi-Agent Critique and Refinement

Mesh4D: A Motion-Aware Multi-View Variational Autoencoder for 3D+t Mesh Reconstruction

Multi-Agent Reasoning for Cardiovascular Imaging Phenotype Analysis

CardiacFlow: 3D+t Four-Chamber Cardiac Shape Completion and Generation via Flow Matching

A personalized time-resolved 3D mesh generative model for unveiling normal heart dynamics

A Foundation Model for Lesion Segmentation on Brain MRI with Mixture of Modality Experts

Genetic and phenotypic architecture of human myocardial trabeculation

CHeart: A conditional spatio-temporal generative model for cardiac anatomy

LUMA

Selected Publications

CPAgents: Agentic Composite Phenotype Generation for Cardiac Disease Association

Multi-Agent Reasoning for Cardiovascular Imaging Phenotype Analysis

Mesh4D: A Motion-Aware Multi-View Variational Autoencoder for 3D+t Mesh Reconstruction

A personalized time-resolved 3D mesh generative model for unveiling normal heart dynamics

Genetic and phenotypic architecture of human myocardial trabeculation

CHeart: A Conditional Spatio-Temporal Generative Model for Cardiac Anatomy

Towards Effective MLLM Jailbreaking Through Balanced On-Topicness and OOD-Intensity

Publications

CPAgents: Agentic Composite Phenotype Generation for Cardiac Disease Association

CRAgents for Disease Modelling via Multi-Agent Critique and Refinement

Mesh4D: A Motion-Aware Multi-View Variational Autoencoder for 3D+t Mesh Reconstruction

Multi-Agent Reasoning for Cardiovascular Imaging Phenotype Analysis

CardiacFlow: 3D+t Four-Chamber Cardiac Shape Completion and Generation via Flow Matching

A personalized time-resolved 3D mesh generative model for unveiling normal heart dynamics

A Foundation Model for Lesion Segmentation on Brain MRI with Mixture of Modality Experts

Genetic and phenotypic architecture of human myocardial trabeculation

CHeart: A conditional spatio-temporal generative model for cardiac anatomy

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